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Antimicrobial Peptide Database & Software


Sequence analysis tools

HydroMCalc

Calculate the mean hydrophobicity, mean hydrophobic moment and relative hydrophobic moment for a peptide sequence in a regular conformation (alpha-helical, 3/10 helix, polyproline II, twisted beta-sheet, extended), using our hydrophobicity scale, and display an Edmundson projection of the sequence in that conformation
HydroPlot

Hydropathy plots for different sliding window sizes using using our hydrophobicity scale
Online Sequence Databases

AMSDb

 Antimicrobial Sequences Database (Trieste)
BAPb

 Bacterial Antimicrobial Sequences Database (Trieste - Under construction)
ANTIMIC

 Institute of Infocomm Research, Singapore - Database of Antimicrobial Peptides> (Inactive ?)
APD

 UNMC Nebraska Antimicrobial Peptide Database
APPDb

 St. Vincent's Hospital, Dublin - Antimicrobial Peptide & Protein Database> (presently inactive)
PenBase

 Immunaqua Consortium Penaeidin Database
AMPer

 AMPer: A Database and an Automated Discovery Tool for Gene-Coded Antimicrobial Peptides
Defensin Knowledgebase

 A manually curated database and information source devoted to the defensin family of antimicrobial peptides
MiniCOPE

 Innate immunity defense peptides MiniCOPE Dictionary
Peptaibol Database

 Peptaibol database
SAPD

 Synthetic Antibiotic Peptide Database
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